PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016239m
Common NameCICLE_v10016239mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 274aa    MW: 31965 Da    PI: 9.5676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016239mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099107130123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C++C+k F    +L +H  + H
  Ciclev10016239m 107 WRCGYCKKKFYEEKYLDKHFENrH 130
                      58*****************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKKRSGSKRT VVFLFLCLPF SSTALQLTKD FKESAPGRNL KQVEEDVHEV HCSRERSRAA  60
WNIIDEYLMP FVEKEQYLIS PKCRLHPDND LYRDQEQHKF HVDVDEWRCG YCKKKFYEEK  120
YLDKHFENRH YNLLNVSTGR CMADICGALH CDLMLEPMIR KTKCNPAAAA RNRHLCESLA  180
NSCFPVNEGP SASRLHEFFL RQFCDAHTCT GKQKPLSKGH RKRTSMTYVT ISILILMLLP  240
LFYGFVYLYQ RGIKRGAQEL KRISQGGRKK KPY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447180.10.0uncharacterized protein LOC18053599
RefseqXP_006469965.10.0uncharacterized protein LOC102630308
TrEMBLV4U8G90.0V4U8G9_9ROSI; Uncharacterized protein
STRINGXP_006469965.10.0(Citrus sinensis)
STRINGXP_006447180.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-111C2H2-like zinc finger protein