PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10016017m

Common Name

CICLE_v10016017mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 312aa MW: 33970.8 Da PI: 9.3835

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10016017m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.4	2.3e-36	48	105	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + + lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvP+Gggr+ ++ Ciclev10016017m 48 QAEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPIGGGRKSKR 105 56789************************************************87766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	49	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-32	51	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.363	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGLSSKQVSS DGQGWSQSLL QAQTLELPKP ASVKRPLQQQ SSLNQQQQAE PLKCPRCDST 60 NTKFCYYNNY NKSQPRHFCK ACKRHWTKGG TLRNVPIGGG RKSKRLKTSD NAATSTATAT 120 ASRVSTHVAV QSQQQRQILP FPLGDDQKNL SDVPLYQPLI HPPSNLLESK GMGTNNINVG 180 NPFISSSLGL PQIQIQKYQS LTIPNHASTS SFNPTPSTVS NSFQRSASVI NYAGEITMED 240 PTNVISTTST TATSMPITIA SSSAVTQPWQ QVASTSSGTN NMTTSYWNWD DIDTFVSTDL 300 NIPWDDSDIK P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047076.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	V4W8I6	0.0	V4W8I6_9ROSI; Uncharacterized protein
STRING	XP_006449294.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10016017m
Entrez Gene	18053331