PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015976m
Common NameCICLE_v10015976mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 318aa    MW: 35500.6 Da    PI: 7.9918
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015976mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-33722121128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                      lp+G++F+Ptd+e++ e+L++kv +++      +++  +i++++    i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++     
  Ciclev10015976m  72 LPAGVKFDPTDNEIL-EHLEAKVMSDSrklhplIDE--FIPTLEghngICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedg 161
                      799***********9.99****99999566433222..3443323334**********.555666777******************74444655 PP

              NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Ciclev10015976m 162 sETRWHKTGKTRAVFV-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 212
                      5788************.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-3767231IPR003441NAC domain
PROSITE profilePS5100533.17272231IPR003441NAC domain
PfamPF023652.6E-1573212IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRWCNNKKID SSEDDEGAAA ANAIDQLTTS SATNSTSAVR STDYEIRTIT CPSCGHIIQF  60
QDQAGINDLP GLPAGVKFDP TDNEILEHLE AKVMSDSRKL HPLIDEFIPT LEGHNGICYT  120
HPEKLPGVSK DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRAVFVGGT  180
VKGFKKILVL YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVASKVFY QTQPRQCGSS  240
GINKDPSLEI SGHNSIHVPH KSSPPTFIEY YNQPYMTYDH GSMHTRESSP QLIPNLVVQG  300
DGSSFIRLAT DTSSKKS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047043.10.0NAC domain-containing protein 73
RefseqXP_024047044.10.0NAC domain-containing protein 73
SwissprotF4HY611e-116NAC10_ARATH; NAC domain-containing protein 10
SwissprotO494591e-116NAC73_ARATH; NAC domain-containing protein 73
TrEMBLV4UK420.0V4UK42_9ROSI; Uncharacterized protein
STRINGXP_006449416.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]