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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10015818m |
Common Name | CICLE_v10015818mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
TALE |
Protein Properties |
Length: 346aa MW: 38413.2 Da PI: 5.9251 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10015818m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 29.1 | 1.7e-09 | 273 | 306 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yps+ ++ LA+++gL+++q+ +WF N+R ++
Ciclev10015818m 273 WPYPSEPQKLALAESTGLDQKQINNWFINQRKRH 306
58*****************************885 PP
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2 | ELK | 35.4 | 2.4e-12 | 226 | 247 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
+LK+qLlr Ysg+LgsLkqEF+
Ciclev10015818m 226 DLKDQLLRRYSGSLGSLKQEFL 247
6********************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MESGGTSSTR NPNCWMVLGE SSSNNNGNVN NNMNGSLCSI MMMNSSAGTT SDHNNKAFLP 60 PNLMMPPPQQ QEVQYDCTDN SSNSIKAGIF AHPHFPRLLA SYVNCQKVGA PAQVVARLDE 120 ACASGEAIMS RSSAGTAASR VGDDPALDQF MEAYCEMLTK YEQELTKPFK DASLFLSEID 180 AQLKTLAVSS NISVVAFGDS AGQSGSSEEE IDVKDHCIDP LAEDRDLKDQ LLRRYSGSLG 240 SLKQEFLKKK KKGKLPKEAR QLLLDWWSRH HRWPYPSEPQ KLALAESTGL DQKQINNWFI 300 NQRKRHWKPS EDMQFVMMDA AYPQYYMENG VGNPFPMDCT TLARF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. |
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help
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Source |
Description |
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF533702 | 1e-36 | EF533702.1 Glycine max clone BAC GM_WBb098N11, complete sequence. |