PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015695m
Common NameCICLE_v10015695mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 364aa    MW: 42242.5 Da    PI: 6.9647
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015695mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.99.9e-27239323186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++ e++aLi +r+ +e+++    +k  lWe++s+ mr+ g++rs k+Ckekwen+nk+++k  e+ kk+  e+s+tc+yf++le
  Ciclev10015695m 239 RWPEAEIQALIMLRTTLEHQFHGVGSKFSLWERISDGMRKMGYHRSGKKCKEKWENMNKYFRKSMENGKKH-LERSKTCQYFHDLE 323
                      8********************************************************************99.57778*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.86E-5237304IPR009057Homeodomain-like
CDDcd122038.50E-24238302No hitNo description
PfamPF138379.2E-19238324No hitNo description
PROSITE profilePS500906.98239296IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEKRTGDRES EFPQQITPFP ESINQPPVIE SVNAPLQKLR PIRRSPADDP PSFEAAADKS  60
LKFGSGSVAE SLGPMSMWFD TEDESSSSSD SDIHVDLFTE IKEPGSQKRK RKTRVKIETF  120
LESLVMKIMD KQEQMNKQLI DMIAKRERER VIREEAWKQQ EMERMKRDEE IRAQETARSI  180
ALISFIQNFL GHEIQLPQPA PVSNVEENGS KDGRNHAENN ITQNANNRKW PEACDPNRRW  240
PEAEIQALIM LRTTLEHQFH GVGSKFSLWE RISDGMRKMG YHRSGKKCKE KWENMNKYFR  300
KSMENGKKHL ERSKTCQYFH DLEMYRNRLV NPGNVTNFPN FENFSESDAS NFTNQEIAAK  360
IED*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449930.10.0trihelix transcription factor GTL1
TrEMBLA0A2H5N6310.0A0A2H5N631_CITUN; Uncharacterized protein
TrEMBLV4UG770.0V4UG77_9ROSI; Uncharacterized protein
STRINGXP_006449930.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-54Trihelix family protein