PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 375aa MW: 41334.6 Da PI: 6.2705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015648m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl Ciclev10015648m 33 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 80 89****************************99**********97 PP
2	Myb_DNA-binding	46.4	8.8e-15	91	131	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Ciclev10015648m 91 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 131 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-22	24	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.205	28	80	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-29	30	127	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	32	82	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-16	33	80	IPR001005	SANT/Myb domain
CDD	cd00167	2.07E-11	35	80	No hit	No description
PROSITE profile	PS51294	24.404	81	135	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-24	83	136	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	85	133	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-11	91	131	No hit	No description
Pfam	PF00249	1.4E-13	91	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MRNPSTSPSS TAAAAAAATN KSTPCCSKVG LKRGPWTPEE DELLANYINK EGEGRWRTLP 60 KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD 120 NEIKNYWNTH LSKKLISQGI DPRTHKPLNQ EFDPSSADQV TNSNSKASTS KAILNSSSSN 180 PNLTPMTVSS GHLDQRHTSA GCGRMISSIM MINKENGYSP NALVDDHDSE YHQNGMMENP 240 YTSLSNCDHH HDDDGGLGLR SNNVNNVFNE GLSYEVDVDI NYCNDDVFSS FLNSLINEDA 300 FASQHNQQVL QQQQQQHLSN ETIALPNTTT GSSSDPLVST AAASTFGLEA NWESPIMASS 360 LNQDESKRVD EHVE*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MRNPSTSPSS TAAAAAAATN KSTPCCSKVG LKRGPWTPEE DELLANYINK EGEGRWRTLP  60
KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD  120
NEIKNYWNTH LSKKLISQGI DPRTHKPLNQ EFDPSSADQV TNSNSKASTS KAILNSSSSN  180
PNLTPMTVSS GHLDQRHTSA GCGRMISSIM MINKENGYSP NALVDDHDSE YHQNGMMENP  240
YTSLSNCDHH HDDDGGLGLR SNNVNNVFNE GLSYEVDVDI NYCNDDVFSS FLNSLINEDA  300
FASQHNQQVL QQQQQQHLSN ETIALPNTTT GSSSDPLVST AAASTFGLEA NWESPIMASS  360
LNQDESKRVD EHVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-25	31	135	2	105	C-Myb DNA-Binding Domain
1msf_C	5e-25	31	135	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445608.1	0.0	transcription factor MYB34
Swissprot	Q38850	3e-82	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	V4TEQ6	0.0	V4TEQ6_9ROSI; Uncharacterized protein
STRING	XP_006445608.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-83	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Ciclev10015648m
Entrez Gene	18053295

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]