PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015472m
Common NameCICLE_v10015472mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 404aa    MW: 45998.9 Da    PI: 4.8554
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015472mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35141052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d+++++++sws++++sf+v+++ +fa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ e l+
  Ciclev10015472m  14 FLAKTYEMVDDPSTNSTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGQPERLK 98 
                      9***************************************************************9998.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Ciclev10015472m  99 NIHRRKP 105
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDGQGSSNS LPPFLAKTYE MVDDPSTNST VSWSSSNKSF IVWNPPDFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFV RGQPERLKNI HRRKPVHSHS NQNLHGQGTP  120
LTESERQGLK DDIERLKKEK EILLLELQRH EQERQGFESQ MQLLRERFQL MEQRQQKMVS  180
FVGRALQKPG LESNFGVHLE NHDRKRRLPR IDYFYDEANI EDNPMGTSQI VGGADSADIS  240
SSNMEKFEQL ESSMTFWENI VQDVGQSCFQ PNSSLELDES TSCADSPAIS CIQLNVDARP  300
KSPGIDMNSE PAVTAATEPV PSKEPETATT IPVQAGVNDV FWEQFLTENP GSSDAQEVQS  360
ERKECDGKKN ENKPADHGKF WWNMRNVNSL AEQMGHLTPA ERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24410319129Heat shock factor protein 1
5d5v_B2e-24410319129Heat shock factor protein 1
5d5v_D2e-24410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449558.10.0heat stress transcription factor A-4a
RefseqXP_024047370.10.0heat stress transcription factor A-4a
RefseqXP_024047371.10.0heat stress transcription factor A-4a
RefseqXP_024047372.10.0heat stress transcription factor A-4a
SwissprotO494031e-135HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLV4TQJ70.0V4TQJ7_9ROSI; Uncharacterized protein
STRINGXP_006449558.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-120heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]