PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10015437m

Common Name

CICLE_v10015437mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 409aa MW: 45948 Da PI: 7.1787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015437m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	342	387	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+Y+k+Lq Ciclev10015437m 342 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYVKELQ 387 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	8.37E-9	96	151	No hit	No description
SuperFamily	SSF81995	8.37E-9	261	278	No hit	No description
PROSITE profile	PS50888	14.939	336	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-15	339	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.63E-11	340	391	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	341	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	342	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	342	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MESDLQQHRH HFLHDHQIQH HQKQLNSGLT RYQSAPSSYF SSFLDKDAFE DFLMRPSSPE 60 TERIFARFLS NSAGNTDDTE NTSNSIIPEQ KIIQSDQQQQ QQQLMQLQQQ QQQQQQQQQQ 120 QQSYYQTQPP QPQLQQQNFQ SQNVGMDRFS TQPMKMSGAG AGPGGNNSNL IRHSSSPAGL 180 FSNITIENGY VMMKGMGDYG GGNNTIKRES TSYASSGKPP TGAKPMSPIV EVDNKTSNAG 240 FKEGHNGNYS TGFPMDSWDD SSMMPENIVS EVNRLREDDR TLSGLSATET QSIDLGTRPP 300 PLLAHHLSLP KDIATIEKLL HYQDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ 360 ELVPNMDKQT NTADMLDLAV DYVKELQCQV KALSDNRAKC TCAKQEQQ*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MESDLQQHRH HFLHDHQIQH HQKQLNSGLT RYQSAPSSYF SSFLDKDAFE DFLMRPSSPE  60
TERIFARFLS NSAGNTDDTE NTSNSIIPEQ KIIQSDQQQQ QQQLMQLQQQ QQQQQQQQQQ  120
QQSYYQTQPP QPQLQQQNFQ SQNVGMDRFS TQPMKMSGAG AGPGGNNSNL IRHSSSPAGL  180
FSNITIENGY VMMKGMGDYG GGNNTIKRES TSYASSGKPP TGAKPMSPIV EVDNKTSNAG  240
FKEGHNGNYS TGFPMDSWDD SSMMPENIVS EVNRLREDDR TLSGLSATET QSIDLGTRPP  300
PLLAHHLSLP KDIATIEKLL HYQDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ  360
ELVPNMDKQT NTADMLDLAV DYVKELQCQV KALSDNRAKC TCAKQEQQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446032.1	0.0	transcription factor bHLH122
TrEMBL	V4UAM1	0.0	V4UAM1_9ROSI; Uncharacterized protein
STRING	XP_006446031.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10015437m
Entrez Gene	18052868