PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10015436m | ||||||||
Common Name | CICLE_v10015437mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 409aa MW: 45948 Da PI: 7.1787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 342 | 387 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+Y+k+Lq Ciclev10015436m 342 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYVKELQ 387 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 8.37E-9 | 96 | 151 | No hit | No description |
SuperFamily | SSF81995 | 8.37E-9 | 261 | 278 | No hit | No description |
PROSITE profile | PS50888 | 14.939 | 336 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 339 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-11 | 340 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 341 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 342 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 342 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 409 aa Download sequence Send to blast |
MESDLQQHRH HFLHDHQIQH HQKQLNSGLT RYQSAPSSYF SSFLDKDAFE DFLMRPSSPE 60 TERIFARFLS NSAGNTDDTE NTSNSIIPEQ KIIQSDQQQQ QQQLMQLQQQ QQQQQQQQQQ 120 QQSYYQTQPP QPQLQQQNFQ SQNVGMDRFS TQPMKMSGAG AGPGGNNSNL IRHSSSPAGL 180 FSNITIENGY VMMKGMGDYG GGNNTIKRES TSYASSGKPP TGAKPMSPIV EVDNKTSNAG 240 FKEGHNGNYS TGFPMDSWDD SSMMPENIVS EVNRLREDDR TLSGLSATET QSIDLGTRPP 300 PLLAHHLSLP KDIATIEKLL HYQDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ 360 ELVPNMDKQT NTADMLDLAV DYVKELQCQV KALSDNRAKC TCAKQEQQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446032.1 | 0.0 | transcription factor bHLH122 | ||||
TrEMBL | V4UAM1 | 0.0 | V4UAM1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446031.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10547 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51140.1 | 3e-59 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10015436m |
Entrez Gene | 18052868 |