PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015222m
Common NameCICLE_v10015222mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 450aa    MW: 49856.7 Da    PI: 5.8014
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015222mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.81.1e-90444422373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                      ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r ++ ++++ + ++ s+t+   + + +++++l  ++++ P+++f
  Ciclev10015222m  44 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTN---HRRLMSVTELagYVDLIPWHRF 134
                      689*********************************************************999999998...455555555566********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                      ++ + N+aIl+a++g ++vHi+Df+i++++QWp+L++aLa+Rpeg+pslRiT+  s  ++    + ++ee+g rL +fA+  +vpfef+v+   
  Ciclev10015222m 135 GFCASNSAILKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGSPSLRITVPYSRPPVpplLNVSTEEVGLRLGNFAKFRDVPFEFKVIdds 228
                      *****************************************************9997777889999*************************999 PP

             GRAS 182 ............vakrledl.............eleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqe 245
                                                       +++ L+++++Eal++n++  l +l+d+++   +      rd++L+l+k+l+P +++vv+++
  Ciclev10015222m 229 ssagdivmskleS------SssfhfesllshlsTPSILNLREDEALVINCQNWLRYLYDDEGRGINaqdasLRDAFLHLIKGLNPCIMIVVDED 316
                      9999985444330......32232222233344556669999****************9987654444455899******************** PP

             GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                      +d++++s+  r++ +++y +  fd+le+ lp+es++r  +E+  +g +i+n+++ eg++r+er e+ +k ++r+++aGF ++p+ e+++k++++
  Ciclev10015222m 317 SDLSASSLTSRIATCFNYLWIPFDALETFLPKESRQRLDYEAD-VGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRS 409
                      *******************************************.************************************************** PP

             GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ll +++  g+ ++ e++ l l+Wk+++ v+++aW
  Ciclev10015222m 410 LLDEHA-SGWGMKREEEMLALTWKGHNSVFATAW 442
                      ******.889999999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.56817424IPR005202Transcription factor GRAS
PfamPF035143.9E-8844442IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MKAELRANTS SISLQNPSLF NTGQSSIPGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASPVGDPN QRLTSSFLRA LISRASKVCP TTLSNFNGSS TNHRRLMSVT  120
ELAGYVDLIP WHRFGFCASN SAILKAIQGY SKVHILDFSI THCMQWPTLI DALAKRPEGS  180
PSLRITVPYS RPPVPPLLNV STEEVGLRLG NFAKFRDVPF EFKVIDDSSS AGDIVMSKLE  240
SSSSFHFESL LSHLSTPSIL NLREDEALVI NCQNWLRYLY DDEGRGINAQ DASLRDAFLH  300
LIKGLNPCIM IVVDEDSDLS ASSLTSRIAT CFNYLWIPFD ALETFLPKES RQRLDYEADV  360
GHKIENIISF EGFQRIERSE SGSKLSQRMK NAGFFSLPFC EETVKEVRSL LDEHASGWGM  420
KREEEMLALT WKGHNSVFAT AWVPNGLED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B5e-5694454421Protein SHORT-ROOT
5b3h_E5e-5694454421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447452.10.0scarecrow-like protein 32
RefseqXP_006469739.10.0scarecrow-like protein 32
TrEMBLV4U4760.0V4U476_9ROSI; Uncharacterized protein
STRINGXP_006469739.10.0(Citrus sinensis)
STRINGXP_006447452.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein