PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015219m
Common NameCICLE_v10015219mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 451aa    MW: 50451.8 Da    PI: 5.8078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015219mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.67e-143494461373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+aayfteALa+r+++s+++l kal++++ s  ++see+ ++klf++++P+lk++
  Ciclev10015219m  49 LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS--SVSEEMLVRKLFFDMFPFLKVA 140
                      689*************************************************************999987..59******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI ea+ege+ vH+iD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn  v+++le+
  Ciclev10015219m 141 FVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLEN 229
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqea 246
                      l++++Lrvk+gEala+++vlqlh+ll                                    +     + + d++L+ +++lsPk++vv+eq++
  Ciclev10015219m 230 LDFDKLRVKTGEALAISSVLQLHSLLaaddyaslialknsllangygysqspdsvsssplspN----ASAKMDSFLNSLWGLSPKIMVVTEQDS 319
                      ******************************************************997653222....2225788******************** PP

             GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                      +hn+ +++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +r++ a F++vpls+  + qa++l
  Ciclev10015219m 320 NHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRL 413
                      ********************************************************************************************** PP

             GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      l+ ++ dgyr+ e++ +++++W+drpL+svSaW
  Ciclev10015219m 414 LQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 446
                      ********************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.57223427IPR005202Transcription factor GRAS
PfamPF035142.4E-14049446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVPMFQDDGS SSVTSSSSPL QFFSTMSPSL GSPYQWLREL KSEERGLYLI HLLLSCANHV  60
ANGSLENANL ALDQISQLAS PDGDTMQRIA AYFTEALAQR ILKSWPGLHK ALNSTRISSV  120
SEEMLVRKLF FDMFPFLKVA FVLTNQAIIE AMEGEKVVHV IDLNAAEPAQ WIALIQALST  180
RPEGPPHLRI TGIHPQKEVL DQMAHRLTEE AEKLDIPFQF NSVVSKLENL DFDKLRVKTG  240
EALAISSVLQ LHSLLAADDY ASLIALKNSL LANGYGYSQS PDSVSSSPLS PNASAKMDSF  300
LNSLWGLSPK IMVVTEQDSN HNGLTLMERL LEALYSYAAL FDCLESSVSR TSMERLKVEK  360
MLFGEEIKNI IACEGFERKE RHEKLEKWIQ RFDLACFGNV PLSYCGMLQA RRLLQSYNCD  420
GYRIAEDNRC VLICWHDRPL FSVSAWSCRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-68324491380Protein SCARECROW
5b3h_D3e-68324491380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470721.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4W0V10.0V4W0V1_9ROSI; Uncharacterized protein
STRINGXP_006446239.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]