PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015189m
Common NameCICLE_v10015189mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 459aa    MW: 52227.2 Da    PI: 6.3588
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015189mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.56.6e-22124220185
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                      +Wt++ v++Li+a+  ++++   +            +kk++W+ vsk m +rg+++sp+qC++k+++lnkrykk++++ +k+ t++++++ ++ 
  Ciclev10015189m 124 KWTDNVVRLLIAAVACVGDDGTIDGveglkrksgilQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGlTCQVVENPALI 217
                      7**************888888865444556667888**********************************************99****999988 PP

         trihelix  83 dql 85 
                      d +
  Ciclev10015189m 218 DTM 220
                      877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17122212No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDNSSGLGGR FLSGQNVGLL DLESSIPRNQ QNQLGHPSFS RPHQMNMMHG LENDHHHIGL  60
LEVKGSSRKG LPMNFGRGKM VSPINASNNG NTSEEDEPSY TDEGNGENSN GGRDKKGSMW  120
HRMKWTDNVV RLLIAAVACV GDDGTIDGVE GLKRKSGILQ KKGKWKTVSK IMISRGCQVS  180
PQQCEDKFND LNKRYKKLND ILGKGLTCQV VENPALIDTM SCSHLSPKAK DDVRKILGSK  240
HLFYKEMFAY HNGKKIPNCH DIDLQGCSVP SDRSPKGNDE SEEEEADRNN DTDDDESDNE  300
DDRNDDEDEG RMAEIGERGK GNEEDGHSWP QSAGRSVFEM EMARIFQDPS KSMWERREWI  360
KKQKLALQNQ RVSIQAQAFE LEKQHLKWLR YCSKKDRELE RSRLENERIR LDNEQMILHL  420
KQKQFELDLR KTEVSLEPTS LGNRDRDRDQ IDDLGRHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446099.10.0uncharacterized protein LOC18051584 isoform X1
TrEMBLV4W0J20.0V4W0J2_9ROSI; Uncharacterized protein
STRINGXP_006446099.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-64sequence-specific DNA binding transcription factors