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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10015172m | ||||||||
Common Name | CICLE_v10015039mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 462aa MW: 50339.8 Da PI: 6.9345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 380 | 417 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L Ciclev10015172m 380 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 417 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.074 | 368 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 378 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.82E-6 | 378 | 422 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-8 | 382 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAEEFQTGIC GGAWWINPTR SSSLSPCSAA GIGLSDHMGS FLWPSNDHFH MVDTKTTTLT 60 PAGTATTKFC EESANNNNNN NSVSADTSSM AFTQKHQQTD SDNGGSSSIL MDSTLQMMSL 120 VPSSSSSSTD CFQALLRGNG RAENNYRSMR LEDLNSQIQK EWSPSKSYAS SAGAGDHHQE 180 CFSLDQSHPV IKSATASFPD NCTVSESNCQ GLSPGFPVDS ASYGYTSALL QSYFEPQPQP 240 VQQQSLYSSN NTRSMGNYMS TANYGNNYNE VSPPWPKFAA ASFVKPSLPK QQQQQPSGGL 300 HFSNNTPFWN ATALNDISRP GGLLAAELGE KRTCPTFTAK YNNNEEVRDS GSAAKKGSSE 360 PAFKRPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ 420 VSVLTTPYMK QGTQIPQQQV AKTITHSLLI PYYMFMHCRL A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449162.1 | 0.0 | transcription factor bHLH112 isoform X1 | ||||
TrEMBL | V4UJA8 | 0.0 | V4UJA8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449162.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.2 | 9e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10015172m |
Entrez Gene | 18051787 |