PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10014989m | ||||||||
Common Name | CICLE_v10014986mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 500aa MW: 54656.5 Da PI: 7.7342 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.8 | 1.1e-35 | 94 | 254 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.se 72 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +i el+++ + + + Ciclev10014989m 94 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLnstfpdtpkqlsdekrasegtdQ---QgFD 184 689*************************************************************87776555555444433332110...1211 PP TCP 73 c...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135 + + + +++ ++n+s++++ +++a+s++s++s+ s l+l++ r kar+rarer ++++ +k++ Ciclev10014989m 185 SvelDGDPNNNYQQNQSQHRSLSKSACSSNSETSKGSGLSLSRselrVNRDKARERARERAAKEKDQKEN 254 12322222233333444447778888888889998888999887344455*********66665555543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-41 | 95 | 251 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.671 | 96 | 154 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.839 | 231 | 249 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEVEEIQSQT QACKLSRIGN GRLDSTKMSH KDQYPDDEED GEQQQLQLIK RASANDSGGA 60 LGVNNTAAAA GCGGGNRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT 120 AIQFYDLQDR LGVDQPSKAV EWLIKAAADS IAELPSLNST FPDTPKQLSD EKRASEGTDQ 180 QGFDSVELDG DPNNNYQQNQ SQHRSLSKSA CSSNSETSKG SGLSLSRSEL RVNRDKARER 240 ARERAAKEKD QKENESQINA NRHHHHNVNP ISQSSSFTEL LTGGIGGSVN NNNNTSPTTA 300 SSQQQNEEPN FFHKATTAAV RPWPAAPMDY FNSGLLGPSS SRPPHHHHLS GQIQLGSSNS 360 LPQAMQIPPF SVTNENHHQE MQHFSFVHDH LIPVTATQPG PGGGDYFTIS SSLGFNRGTL 420 QSNSSPSVFP HIQRFGSSSP IDGSNVNVPF LIGTAPAVEN HNHHHHHHQF PPGFDGRLHL 480 YYGDGSRHSD SNQKDKGKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-23 | 101 | 155 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-23 | 101 | 155 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.22543 | 0.0 | root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045831.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024045832.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024045833.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | V4W7U2 | 0.0 | V4W7U2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449018.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10014989m |
Entrez Gene | 18051865 |