PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014958m
Common NameCICLE_v10014958mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 512aa    MW: 55342.2 Da    PI: 5.9546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014958mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-162370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk++G g+W+++ +  g+ R++k+c++rw ++l
  Ciclev10014958m 23 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 70
                     79******************************************9986 PP
2Myb_DNA-binding51.62.1e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++++++++++lG++ W++ a+ ++ gRt++++k++w++
  Ciclev10014958m  76 KGSFSPEEEKIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 119
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7721870IPR017930Myb domain
SuperFamilySSF466893.74E-3020117IPR009057Homeodomain-like
SMARTSM007172.3E-132272IPR001005SANT/Myb domain
PfamPF002497.0E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-242477IPR009057Homeodomain-like
CDDcd001673.08E-112570No hitNo description
PROSITE profilePS5129425.63871125IPR017930Myb domain
SMARTSM007174.0E-1675123IPR001005SANT/Myb domain
PfamPF002491.7E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2678124IPR009057Homeodomain-like
CDDcd001671.09E-1178119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVSGGGGAEL GRGHHHHHQS LKKGPWTAAE DAILMEYVKK HGEGNWNAVQ KNSGLMRCGK  60
SCRLRWANHL RPNLKKGSFS PEEEKIIIEL HAKLGNKWAR MAAQLPGRTD NEIKNYWNTR  120
MKRRQRAGLP IYPQEIQDKA AAAFHLHQHH KRPQNQISPS PPAALLITSQ NPAYNNASLS  180
AMFNSFNFQS PTNIPLQNQA PGSCLSNPNN HAFQLFFDSA NANAGGFSLL PYHPPSSTTS  240
LMNENIQTQT TMQMPPFKVN SAPGNHEMSF SAMISQPIDF GTGLESELPS SQIPAVPKQA  300
SAPASSGSSG GFCAVGISST TDNNNDYQIS QKATCGGNSG LLDDLVQESN KISSNEKFKG  360
QFESFSDAGD KGKSVVDASS ADEEVNEGVE SMMANAADNN NQWDDFSSSQ SSIEMNKTNQ  420
EPLEEMQSMD DDLMSLLNNF PLSVPLPEWY PGTSTETSNV SSSSMTGGNQ EATTTDHQPN  480
TPPAPAPTTA ASPDLQWSLG SCCWNNMPGI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31211245107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447574.10.0transcription factor MYB101
RefseqXP_024951245.10.0transcription factor MYB101
TrEMBLV4W4880.0V4W488_9ROSI; Uncharacterized protein
STRINGXP_006469761.10.0(Citrus sinensis)
STRINGXP_006447574.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-75myb domain protein 101