PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014665m
Common NameCICLE_v10014665mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 600aa    MW: 65172.9 Da    PI: 6.7676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014665mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31328386259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Ciclev10014665m 328 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 386
                      8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-34312388IPR003657WRKY domain
SuperFamilySSF1182905.23E-28320388IPR003657WRKY domain
PROSITE profilePS5081129.953322388IPR003657WRKY domain
SMARTSM007743.8E-37327387IPR003657WRKY domain
PfamPF031066.2E-27328386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAKGSGLSID HNISDPIAGK NKNFFLCHQP AVLNSFSDDH HHFHKFHYLM DAKRSPATTP  60
STIQFPVCLN HDEDSPQQSS DDHHHHNKRK VIDEMDFFTD KTTHSRDHHH YKDSKLELNV  120
NTGLNLLTTN TSSDHSTVDD GISTNMEDKK AKNEYAVVQA ELERVNAENQ RLKDMVNEVT  180
NNYNALQLQL MAFMQHHNAR AADENSDGRQ VEEKKGQLAA PRRFIDLGLG VNTADTADEP  240
ALSSSEGRSR DLGGSPVNGN SNNNEESNVL FGQDKKEFVK RDDSPDRNYG PNKVPKFSSS  300
SKNVDQTEAT MRKARVSVRA RSEAPMINDG CQWRKYGQKM AKGNPCPRAY YRCTMAAGCP  360
VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARLLLSGSM SSADGLMNAN  420
FLARTLLPCS SSMATISASA PFPTVTLDLT QTPNPSNVQR SPNQFQVPFP NPSHNFADGA  480
AAAAAGSLLP QIFGQALYNQ SKFSGLQMSQ DMDPSQLGNQ SQLPSPAMQQ GQQHNSLADS  540
VSAATAAIAA DPNFTAALAA AITSIINGGT PQSNNVTNNE NTDDLATTTN GNVKFSQSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23314390176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447589.10.0probable WRKY transcription factor 31
RefseqXP_006495237.10.0probable WRKY transcription factor 31
SwissprotQ9XEC31e-140WRK42_ARATH; WRKY transcription factor 42
TrEMBLV4W4990.0V4W499_9ROSI; Uncharacterized protein
STRINGXP_006495237.10.0(Citrus sinensis)
STRINGXP_006447589.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-112WRKY DNA-binding protein 31