PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014553m
Common NameCICLE_v10014553mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 650aa    MW: 71667.7 Da    PI: 8.0963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014553mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.1e-077999526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C+ff + G+C  G++C+F H+
  Ciclev10014553m 79 ICDFFTK-GWCIKGNSCRFLHV 99
                     8**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001774100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-67498IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75674101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-479102IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-57999IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MESETTSPSS LTRKSMAGGV RIRDCLGEGT SVEESKPMDT HSADDKQRME SRFVSPAVRI  60
RSLSPGAEIK DGNKRPAVIC DFFTKGWCIK GNSCRFLHVK DDVNNTTQLL GEDVATASVK  120
ASLKTDAQFD EGSRNMTKRS RMPSFPDALA CSERILTQER GESKRLPQFQ ENHRLSLLQK  180
ENTSSDNSPS SREDIGCSLS SKDAERESFR HNWPADYGNC ASLINEGSSP IFRNNMHLEY  240
RSSSIGSAVF SGNYHSGNPS TYPISLEERP WIQSKYMHND YSSPAFSHAM NSSLGTSGPT  300
SSGFPSHHIS TWTGLSLPFS SASLSASPLD AKKLLDSNRE CRNSRLALFL RSTSPFSVSE  360
PEKPQISSDY KTKISSNDWE PSVPFQPSCV IIDTSSPGSK YDPLRDSFDS PKIGHISLKL  420
GFSSVGDSAL NTSDQKLCGD SMLSNTVVPG CNGDKSSVSS HGRLSENVVD KNCCTARNDS  480
LADSEEGVGT SIVDEQNGAM PKENDPSVST YFKDISKSKK PNAKYDSRIQ NDRCRRNKEP  540
KVDRARQNSE MDLEHKADGD GRKESKLMKH FRNDLVEFVK ELLKPSWREG RLSKDAHNTI  600
VKKAVDKVLA TLHPHQIPTT MESTKQYLSS SQPKIAKLVE GYVDKYGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047646.10.0LOW QUALITY PROTEIN: protein FRIGIDA-ESSENTIAL 1
TrEMBLV4W8T40.0V4W8T4_9ROSI; Uncharacterized protein
STRINGXP_006449384.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-41C3H family protein