PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 691aa MW: 80178.1 Da PI: 6.2895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014479m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.3	3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel Ciclev10014479m 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-22	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.299	564	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-7	572	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-5	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MAMKPPTNIW IRRQQCPCGD WKCYIKYEGD DQASTSSQQE KTETTSSLLS SEVVFTPYVG 60 QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRML PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELFE ACKNMAERDV DFVYDYTTDE NEKVENIAWS FGDSIRAYTL FGDVVTFDTS 300 YRSITYGLLL GVWFGMDNHG KAIFFGCVLL QDESTHSFAW ALQTFVRFMR GRHPQTILTD 360 IDLGLRDSIA RELPNTKHVV CIWHILSKLS SWFSSLLGSQ YEEFKAEFDM LCRLESVEDF 420 EHQWNHFVAR FGLVSDKHVA LLFSYRAFWL FSYIRGYFLA RMMTVEFSQS VDTFFKKILS 480 EQTCLQVFFE QVCAAAFGNS TREGVQYVHI KTCMPIEEHA RSILTPYAFR VLQHEIVLST 540 QYATTEMTNG SYLVRHYKKM DGEYLVIWIP EDEQIHCSCK EFEHSGILCR HSLGVLVVKN 600 YFQLPEKYLL LRWRLENSLV TMEDPNPQSS SDECAQAFHS LAAALLTESM ISKERFSYVH 660 KELTGLLDHV RNMPETNEFV VNMPAHNASD *

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MAMKPPTNIW IRRQQCPCGD WKCYIKYEGD DQASTSSQQE KTETTSSLLS SEVVFTPYVG  60
QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRML PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELFE ACKNMAERDV DFVYDYTTDE NEKVENIAWS FGDSIRAYTL FGDVVTFDTS  300
YRSITYGLLL GVWFGMDNHG KAIFFGCVLL QDESTHSFAW ALQTFVRFMR GRHPQTILTD  360
IDLGLRDSIA RELPNTKHVV CIWHILSKLS SWFSSLLGSQ YEEFKAEFDM LCRLESVEDF  420
EHQWNHFVAR FGLVSDKHVA LLFSYRAFWL FSYIRGYFLA RMMTVEFSQS VDTFFKKILS  480
EQTCLQVFFE QVCAAAFGNS TREGVQYVHI KTCMPIEEHA RSILTPYAFR VLQHEIVLST  540
QYATTEMTNG SYLVRHYKKM DGEYLVIWIP EDEQIHCSCK EFEHSGILCR HSLGVLVVKN  600
YFQLPEKYLL LRWRLENSLV TMEDPNPQSS SDECAQAFHS LAAALLTESM ISKERFSYVH  660
KELTGLLDHV RNMPETNEFV VNMPAHNASD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447802.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006447803.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_015382916.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024047442.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2H5QIJ8	0.0	A0A2H5QIJ8_CITUN; Uncharacterized protein
TrEMBL	V4TKP7	0.0	V4TKP7_9ROSI; Uncharacterized protein
STRING	XP_006469463.1	0.0	(Citrus sinensis)
STRING	XP_006447802.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Ciclev10014479m
Entrez Gene	18052194

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]