PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014370m
Common NameCICLE_v10014373mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 761aa    MW: 82984.1 Da    PI: 5.98
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014370mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Ciclev10014370m  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                      688999***********************************************999 PP
2START225.31.9e-702815011206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++  lve+l+d++ qW++ +     +a+t
  Ciclev10014370m 281 ELAVAAMEELIRMAQMGEPLWMTSLdgtaAVLNEDEYVRTFPRGIGpkptgFKCEASRETAVVIMNHISLVEILMDVN-QWSTVFSgivsRAMT 373
                      57899********************999999************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+ae+q++splvp R++++vRy++q+g+g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwve
  Ciclev10014370m 374 LEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHGEGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVE 463
                      *************************************************************995....************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv++++r +h+l+++lv++g a+gak+wvatl+rqce+
  Ciclev10014370m 464 HVEVDDRGVHNLYKQLVSTGNAFGAKRWVATLDRQCER 501
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2370146IPR009057Homeodomain-like
SuperFamilySSF466892.05E-1979148IPR009057Homeodomain-like
PROSITE profilePS5007116.92588148IPR001356Homeobox domain
SMARTSM003891.2E-1989152IPR001356Homeobox domain
CDDcd000862.69E-1991149No hitNo description
PfamPF000464.3E-1891146IPR001356Homeobox domain
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084845.627272504IPR002913START domain
SuperFamilySSF559619.89E-37272503No hitNo description
CDDcd088753.12E-131276500No hitNo description
SMARTSM002346.6E-66281501IPR002913START domain
PfamPF018521.4E-59282501IPR002913START domain
Gene3DG3DSA:3.30.530.207.5E-6376468IPR023393START-like domain
SuperFamilySSF559619.62E-25521752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MPTGVMIPAR NMPSTIGRNG NVGGLGSSSG LTLSQPTNMM EGQLHPLDMT QNTSESEMAR  60
LREEEFDSTK SGSENHEGAS GDDQEQRPNK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRTE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL LSPPVPSRPL  240
ELAVGNFGAQ PGIGGGEMYG AADLLRSISA PTEADKPMII ELAVAAMEEL IRMAQMGEPL  300
WMTSLDGTAA VLNEDEYVRT FPRGIGPKPT GFKCEASRET AVVIMNHISL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHGEG  420
TWAVVDVSLD NLRPSPAVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDR GVHNLYKQLV  480
STGNAFGAKR WVATLDRQCE RLASVMATNI PTGEVGVITN QDGRKSMLKL AERMVISFCA  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKRVFDFLR  600
DENTRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI LQESCTDPTA  660
SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTS LHGANIGEAA SGGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCESA *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046029.10.0homeobox-leucine zipper protein HDG2 isoform X2
RefseqXP_024950958.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV4W4610.0V4W461_9ROSI; Uncharacterized protein
STRINGXP_006469695.10.0(Citrus sinensis)
STRINGXP_006447537.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2