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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013796m | ||||||||
Common Name | CICLE_v10013796mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 384aa MW: 41669 Da PI: 4.4227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Ciclev10013796m 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.70E-32 | 44 | 101 | No hit | No description |
SMART | SM00380 | 6.3E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.559 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MARKRKACEG VEEKGADEGN MTWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPSTYS TPALPSKITN 120 LLLQRLKARN NSAFSPSSSF PANNQSERQP AEEYCEPEAT SADLSDTRLA DFLNDTEDYN 180 TIIGTNASTL DSMTTSLKSC LSDQKEEDSG SGSGLDYNLS DTGGQCSSGE EEAGSDIGSI 240 DFHFLDNVGS SSCFYSPFEI AAEIEDLVEA ETYADEPSML RAAMKRMKYE RKFSASLYAF 300 NGIPECLKLR LESGTKGCGK SELSKLQNAC SGKNIEEGKK IEEEGKQDEN SESSSAMGSN 360 SPTSDGELSI WSSLDLPPIC FVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 45 | 101 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431219.1 | 0.0 | uncharacterized protein LOC18038124 | ||||
TrEMBL | V4UXE6 | 0.0 | V4UXE6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431219.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18279 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013796m |
Entrez Gene | 18038124 |