PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013730m
Common NameCICLE_v10013730mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 408aa    MW: 47272.2 Da    PI: 5.3153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013730mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.71.1e-2391411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      lp+G++F P++e+lv +yL ++++g ++++ e  +k+vd+y++ e wd+ k++ +    + +++yfF++ +kk+ +g+r nr++ sg W+    
  Ciclev10013730m   9 LPVGCKFLPSEEQLVRYYLFNRISGIPTPFVEYfVKDVDLYDYeESWDIWKQFGGsnleDGEDLYFFTHLKKKSINGSRINRKVGSGAWQGEDA 102
                      799************************9988877*******99578***753333223256688**************************9999 PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + vls  +++ +g kk++ + + ++p+  +  W+mhey+l
  Ciclev10013730m 103 GELVLSCnSNRPIGSKKIFRYENDNSPH--NRCWIMHEYTL 141
                      888887647778*********9666666..899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-317163IPR003441NAC domain
PROSITE profilePS5100532.5069164IPR003441NAC domain
PfamPF023654.5E-1510141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMQERSRILP VGCKFLPSEE QLVRYYLFNR ISGIPTPFVE YFVKDVDLYD YEESWDIWKQ  60
FGGSNLEDGE DLYFFTHLKK KSINGSRINR KVGSGAWQGE DAGELVLSCN SNRPIGSKKI  120
FRYENDNSPH NRCWIMHEYT LNASLLPQNH HSSNDCVLCR LRKNGGRSVG IKDSRKKIKI  180
DKQVEDNDHQ PAGKSNSRKR VKFEHQVNDN DQPNEPFVEN HQNQYVQENQ SQPLNEQSPH  240
KLLESSVKNN PEEKPPVPRT KQTLLEQIEH LAENGYPSTF EENQQQPMTE PSLHNQLELS  300
QNHLLMEQTP SYLLKGQEEN HQLAVTEQNP YYLELSENHQ NMKHTSPSNL EENQLPATEQ  360
SHDDAIYSEL TDINSWVVHQ LTRIDDATYP HLADDKFLVS NELVYTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-15916115165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430478.20.0NAC domain-containing protein 30
TrEMBLV4S8A20.0V4S8A2_9ROSI; Uncharacterized protein
STRINGXP_006430478.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3298222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-19NAC domain containing protein 47