PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013705m
Common NameCICLE_v10013705mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 358aa    MW: 39563.7 Da    PI: 9.358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013705mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-3167170199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
  Ciclev10013705m  67 SCNGCRVLRKGCNENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 160
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  Ciclev10013705m 161 AAVEAVLKGA 170
                      ****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.2E-9464355IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.09766172IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-2567165IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWKPFIKPEQ TKPSSPLFPL KYPLFSCTLL TERTHKKKKK REKKEHKLTF SHFIFSPKIR  60
TLKMRMSCNG CRVLRKGCNE NCSIRPCLQW IKSPESQANA TVFLAKFYGR AGLMNLINAG  120
PEHLRPAVFR SLLYEACGRI VNPIYGSVGL LWSGSWQLCQ AAVEAVLKGA PITPINSEAA  180
AIGQGPPLKA YDIRHVSKDE NSSASVDRVK TRCRVKRVVK PKANCNKAEV NMVDELARCA  240
EEMNRSTSHE SSLSHQSELA VVENESKESD SMVSAETAET ASLLFRAEPE SGAKPSERVG  300
WDSCGEIGLG LELTLGFEPV AVSRANHVVP MKKRKLEARS TCDGDTCKVE LGLDFPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543KKKKKREKK
23643KKKKREKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037317.10.0LOB domain-containing protein 40
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4SY620.0V4SY62_9ROSI; Uncharacterized protein
STRINGXP_006430780.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-94LOB domain-containing protein 41