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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013691m | ||||||||
Common Name | CICLE_v10013691mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 469aa MW: 54409 Da PI: 4.7697 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.4 | 3.9e-25 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp G++F+P+de lv++yL +k++g++ ++ + +++ ++y + ePw++ +++ + + +++yfF++ +kk+ +g+r r + +g+W+ Ciclev10013691m 8 LPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDlVRTENLYGFkEPWQIWRQFGGpdleDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGEDA 101 699************************88866648888***9879****754433334356789**************************9999 PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+s+ +++++g kk + + k ++p+ + W+mhey+l Ciclev10013691m 102 GKAVVSRkSKKKIGSKKRFRYEKDKSPH--NGCWIMHEYSL 140 999999867788*********9777766..99*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-29 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.488 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-17 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MERTRPPLPL GCKFQPSDEL LVQFYLFNKI SGTPAPFVDD LVRTENLYGF KEPWQIWRQF 60 GGPDLEDGED LYFFTPLKKK SVNGSRIDRR VGTGTWQGED AGKAVVSRKS KKKIGSKKRF 120 RYEKDKSPHN GCWIMHEYSL NPSLLPQNLR SSDLVLCRIR KNGEPAAGGQ KNSRKRRKLD 180 EPVVEEDIDQ PAEPVFVEEH QYHYLQEIQP QPSTELAPHN HLQSFQNHHL MQQSPACFFR 240 AQEENYQQSM TQEDPHELEL SDSHQNMQDT PVTEQNSHEQ LQLSAETHQH FTSSDLQEYQ 300 QMPVTDQIPH HQLQLSFEGY RSRVHTPYIL EENQDVVAST QQITYEQHEC TVENHQYMVH 360 QSSDIEENQQ LPASEQRLYE QLEQSVEKHQ SVLPNPPNFQ DNQQLSGTER SLYDQLDKTI 420 ENHQQMLQTP SNIEGCQDLL AFDDTLLWLL DSSDENLSFD INDILNGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-17 | 8 | 159 | 15 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430447.1 | 0.0 | NAC transcription factor 47 | ||||
TrEMBL | V4SSL0 | 0.0 | V4SSL0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430447.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27541 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 3e-16 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013691m |
Entrez Gene | 18038581 |