PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013589m
Common NameCICLE_v10013589mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 106aa    MW: 11819.8 Da    PI: 8.1853
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013589mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.72.6e-0870922547
          G2-like 25 ekAtPktilelmkvkgLtlehvk 47
                     e+AtPk+i ++m+v+gLt+++vk
  Ciclev10013589m 70 EVATPKQIGDVMQVEGLTIDQVK 92
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-56992IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSSRLSLNLS LKTSYDPKTI YNLVKDLSEM NSVSDKLSVL NDYLLKYEGE LARIAASKLE  60
LPQCKLLLIE VATPKQIGDV MQVEGLTIDQ VKRRVDLNSF RCIVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386523.12e-33uncharacterized protein LOC107177348 isoform X1
RefseqXP_024038315.12e-33uncharacterized protein LOC18038129
RefseqXP_024955996.12e-33uncharacterized protein LOC107177348 isoform X1
RefseqXP_024955997.12e-33uncharacterized protein LOC107177348 isoform X2
TrEMBLV4SYB42e-68V4SYB4_9ROSI; Uncharacterized protein
STRINGXP_006428931.13e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.17e-06G2-like family protein