PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10013486m

Common Name

CICLE_v10013486mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 593aa MW: 67439 Da PI: 8.2631

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10013486m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.9	6.3e-24	229	325	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li a+ +++++++++ +kk++W++vs++m ergf +sp+qC++k+++lnkryk+++e+ +k+ +++++++ ++++ Ciclev10013486m 229 KWTDSMVKLLILAVLYIGDEVGSDGndkkktgallQKKGKWKSVSRAMLERGFYVSPQQCEDKFNDLNKRYKRVNEILGKGtACRVVEKQSLLE 322 7************99999997534566888899********************************************5599999999999 PP trihelix 84 qle 86 ++ Ciclev10013486m 323 TMD 325 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-20	227	350	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
FNKTRGFRVG RKTTTKTMGS FVSAKTKTCE TKTGCYALCP VYITPPRSFQ AKNNTHLFNS 60 ILWFLKEKFL RLHFSRIWCF GQLYFLGLII KITGINISLM EPNGLQGGLF SGIASGMLGL 120 EMPLHPQSQP QPQPQPQTQQ QNPQTNPQNP HHYSQMVAFS HHPHDTELHH TQTQSQQSVK 180 QQHGYLFSSK QKQQQLSPLS DEDELGLTPD DSAGDGKRKA SSSPWQRMKW TDSMVKLLIL 240 AVLYIGDEVG SDGNDKKKTG ALLQKKGKWK SVSRAMLERG FYVSPQQCED KFNDLNKRYK 300 RVNEILGKGT ACRVVEKQSL LETMDLTPKM KEEVKKLLNS KHLFFKEMCA YHSTCAHGSG 360 TGGTPGANHS PEVATEPSVV QQQQAQHRCL HSPETSQLGA NSNRAEMEGT KLVKVGSDEE 420 DDVEEDESDE DDYDDDDDEA VGNSRGQQNG HGQEDEDEND EKLSRKRQRQ GSLPVPVSPM 480 VLQLRCEVSN VIQDGAKTSW EKKQWMKMKL LQLEEQQISY QYQAFELEKQ RLKWVKFSSK 540 KEREMEKAKL VNERRRLENE RMLLALRQKD YEMLDQQQHS SNKRSDPSSI TG*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

FNKTRGFRVG RKTTTKTMGS FVSAKTKTCE TKTGCYALCP VYITPPRSFQ AKNNTHLFNS  60
ILWFLKEKFL RLHFSRIWCF GQLYFLGLII KITGINISLM EPNGLQGGLF SGIASGMLGL  120
EMPLHPQSQP QPQPQPQTQQ QNPQTNPQNP HHYSQMVAFS HHPHDTELHH TQTQSQQSVK  180
QQHGYLFSSK QKQQQLSPLS DEDELGLTPD DSAGDGKRKA SSSPWQRMKW TDSMVKLLIL  240
AVLYIGDEVG SDGNDKKKTG ALLQKKGKWK SVSRAMLERG FYVSPQQCED KFNDLNKRYK  300
RVNEILGKGT ACRVVEKQSL LETMDLTPKM KEEVKKLLNS KHLFFKEMCA YHSTCAHGSG  360
TGGTPGANHS PEVATEPSVV QQQQAQHRCL HSPETSQLGA NSNRAEMEGT KLVKVGSDEE  420
DDVEEDESDE DDYDDDDDEA VGNSRGQQNG HGQEDEDEND EKLSRKRQRQ GSLPVPVSPM  480
VLQLRCEVSN VIQDGAKTSW EKKQWMKMKL LQLEEQQISY QYQAFELEKQ RLKWVKFSSK  540
KEREMEKAKL VNERRRLENE RMLLALRQKD YEMLDQQQHS SNKRSDPSSI TG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024038474.1	0.0	uncharacterized protein LOC18038704 isoform X1
TrEMBL	V4UV56	0.0	V4UV56_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006430334.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6762	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-66	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Ciclev10013486m
Entrez Gene	18038704