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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013453m | ||||||||
Common Name | CICLE_v10013453mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28464 Da PI: 8.6272 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 15 | 69 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH rF eav+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYR+ Ciclev10013453m 15 KERLRWTQELHYRFEEAVNQLGGPDRATPKGILKAMGVPGLTIYHVKSHLQKYRI 69 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.497 | 12 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-30 | 13 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-18 | 14 | 69 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 17 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-15 | 100 | 144 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
PDSDMGSNRS DGSGKERLRW TQELHYRFEE AVNQLGGPDR ATPKGILKAM GVPGLTIYHV 60 KSHLQKYRIS KYIPEIGPSK FERRSISDML PNFGTTSAAQ LNEALQMQTD VYRRMSDHVE 120 VQRNLKLKIE AQGRFLDRIV KDHKNRATPN TKSGKPYSPV SLPALCEETE SNAKDFESDS 180 EADKNEIESG EGIRALKRLR VEDDTLPPMF RVSSLSPNSY NRDIQAKASY PAQDISFPWS 240 FAACSSPLVP SFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 14 | 72 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429402.2 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_006481047.1 | 0.0 | myb family transcription factor PHL7-like | ||||
TrEMBL | V4SPR1 | 0.0 | V4SPR1_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006429402.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16802 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013453m |
Entrez Gene | 18039069 |