PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013382m
Common NameCICLE_v10013382mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31077.8 Da    PI: 8.1399
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013382mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.24.9e-17143193656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Ciclev10013382m 143 KGEKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 193
                      56799********************************************98 PP
2HD-ZIP_I/II1201.2e-38140229292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +k + +keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Ciclev10013382m 140 NKEKGEKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 229
                      5778899*******************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-643127IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.27E-17119196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-17119196IPR009057Homeodomain-like
PROSITE profilePS5007116.244135195IPR001356Homeobox domain
SMARTSM003893.3E-13137199IPR001356Homeobox domain
PfamPF000461.6E-14144193IPR001356Homeobox domain
CDDcd000868.35E-14146196No hitNo description
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
CDDcd146860.00646188227No hitNo description
PfamPF021835.3E-11195229IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26195238IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MELALSLGDT SKPFSSKLSS KDLGFCMGLN GSSFNGKSEE KSASDHHPSP IQLDLLPFSP  60
VPRAHHHQPS SQLRLPWLNV VSTEPGPMDG AGGGGLDVNR FPVAMAQEEA DDGTTALSSP  120
NSTVSSFQMD HFYGNKTNKN KEKGEKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLQK ELQELRALKT SQPFYMQLPA  240
TTLTMCPSCE RVATATTSAA TATTAAAATT AAKGNNSNNK DSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629443e-80AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037844.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX11
SwissprotP466652e-76HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLV4T0Z30.0V4T0Z3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006429896.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-54homeobox from Arabidopsis thaliana