PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013340m
Common NameCICLE_v10013340mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 335aa    MW: 36860.1 Da    PI: 8.0956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013340mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l+  v+ +G+g+W++++++ g++R++k+c++rw +yl
  Ciclev10013340m 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding42.41.6e-1371110546
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + E+e++++++k  G++ W++Ia+ ++ gRt++++k++w++
  Ciclev10013340m  71 APHEEEIIINLHKAIGSR-WSLIAQQLP-GRTDNDVKNFWNT 110
                      589***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-25563IPR009057Homeodomain-like
PROSITE profilePS5129427.092965IPR017930Myb domain
SuperFamilySSF466895.59E-3011108IPR009057Homeodomain-like
SMARTSM007173.5E-151363IPR001005SANT/Myb domain
PfamPF002495.1E-171461IPR001005SANT/Myb domain
CDDcd001671.72E-121761No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2364116IPR009057Homeodomain-like
SMARTSM007172.9E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129416.10366116IPR017930Myb domain
CDDcd001675.85E-972110No hitNo description
PfamPF002492.5E-1172110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRPPCCDKS NVKRGLWTPE EDAKLLAHVA NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPDLRHASF APHEEEIIIN LHKAIGSRWS LIAQQLPGRT DNDVKNFWNT KLKKKLMKLG  120
IDPITHKPFS QIFSDYGNIS GLSINTGNHF GKSINNSLMS KPEPSLVLNG VQNTSYDNPL  180
WDYMAQFHAP VQPHFLTEVA SSCSSSSSGA VTQLNSPQSH AQITPSSPFN WSEFLACDTS  240
LSVDLQQQQH LGPQRMLSSP NSTFTRNETF GCHFTSKNDH GSAGSNYTTS YANQVSKGAS  300
AASSSSSSFV DAILSKDSEM SSQLFELLDE SFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
UniprotTISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431044.10.0transcription factor MYB35
SwissprotQ9LSI71e-85MYB35_ARATH; Transcription factor MYB35
TrEMBLV4UWZ50.0V4UWZ5_9ROSI; Uncharacterized protein
STRINGXP_006431044.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-83MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]