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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013209m | ||||||||
Common Name | CICLE_v10013209mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 92aa MW: 10344.9 Da PI: 9.3627 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.3 | 2.4e-07 | 22 | 58 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++Lr+llP+ + + +K+s + +L+++++YI+sL Ciclev10013209m 22 ELVAKLRQLLPEiR-DRRPQKVSASKVLQETCNYIRSL 58 56689*******76.788899***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.563 | 4 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-8 | 19 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-9 | 20 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-4 | 22 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSSRRSRQAA GVSRISDDQI IELVAKLRQL LPEIRDRRPQ KVSASKVLQE TCNYIRSLHR 60 EVDDLSERLS QLLSTIDADS PEAAIIRSLI M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ567393 | 1e-51 | AJ567393.1 Citrus reticulata microsatellite DNA, clone CiO1CO6. | |||
GenBank | FR692356 | 1e-51 | FR692356.1 Citrus reshni microsatellite DNA, locus mCrCIR01C06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431132.1 | 4e-57 | transcription factor PRE5 | ||||
Swissprot | Q9LJX1 | 5e-43 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | V4SUE9 | 9e-56 | V4SUE9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431132.1 | 2e-56 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM259 | 28 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013209m |
Entrez Gene | 18038918 |