PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 156aa MW: 17416.7 Da PI: 8.6951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012993m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	57	79	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C++Gd+Ck+ H++ Ciclev10012993m 57 VCSRFVKTGFCPFGDSCKYLHPK 79 5********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.0082	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	2.89E-15	4	60	No hit	No description
Pfam	PF06220	3.9E-10	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	15.028	52	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-5	53	79	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	56	80	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.0E-9	57	79	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-7	57	78	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTYF ARKRHLQGIQ HLRAKALWYD SLNETNQTYP DGFPKGVCSR 60 FVKTGFCPFG DSCKYLHPKN NPPQNSGNQG LRATGFTDIN ARSSSVDQRI YLAGGSSFPG 120 DMMRDSMGMS WGNLPPSLKP PPEGGYPLLP FVDWG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428241.1	1e-113	zinc finger CCCH domain-containing protein 3
Refseq	XP_015386408.1	1e-113	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	3e-43	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	V4SWC1	1e-112	V4SWC1_9ROSI; Uncharacterized protein
STRING	XP_006480284.1	1e-113	(Citrus sinensis)
STRING	XP_006428241.1	1e-113	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10474	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-49	C3H family protein

Link Out ? help Back to Top
Phytozome	Ciclev10012993m
Entrez Gene	18038805

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]