PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012974m
Common NameCICLE_v10012974mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 160aa    MW: 18296.2 Da    PI: 9.537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012974mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-111965455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     ++ e+ErrRR+++N+++ +Lr+l+P+      + + K ++ e A+ YI++L+
  Ciclev10012974m 19 KNLEAERRRRQKLNDRLLKLRSLVPNI-----TDMKKETVIEDAITYIRQLK 65
                     56799*********************6.....468899************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6591564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-141679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-101765No hitNo description
PfamPF000108.7E-91864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-122068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-92170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MIKREHRSDS EDKAVYKSKN LEAERRRRQK LNDRLLKLRS LVPNITDMKK ETVIEDAITY  60
IRQLKGRVLF LCDQVLQVEP LEEEETKPKI DENAAEEMKN CGIELRINII FGKKRGNFTK  120
LVEAMNALGF VFGDTSVTTL KGATLFSSVL ELIGRAELR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955930.12e-64uncharacterized protein LOC102624992
TrEMBLV4T2X21e-110V4T2X2_9ROSI; Uncharacterized protein
STRINGXP_006430631.11e-111(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.15e-25bHLH family protein