PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012757m
Common NameCICLE_v10012757mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 211aa    MW: 22247.7 Da    PI: 4.9129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012757mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183382255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr+++ +g+Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  Ciclev10012757m 33 TYRGVRRRS-SGKWVSEIREP-----RkpTRIWLGTFATPEMAAIAYDVAALALKG 82
                     69****888.8*********9.....448************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-303392IPR001471AP2/ERF domain
PROSITE profilePS5103222.2213390IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-203392IPR016177DNA-binding domain
PfamPF008471.8E-113382IPR001471AP2/ERF domain
SMARTSM003806.5E-353396IPR001471AP2/ERF domain
CDDcd000182.70E-313492No hitNo description
PRINTSPR003672.5E-83445IPR001471AP2/ERF domain
PRINTSPR003672.5E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHYSKSNKST NPSSSSGGGS GSNASAGPGR HPTYRGVRRR SSGKWVSEIR EPRKPTRIWL  60
GTFATPEMAA IAYDVAALAL KGQEAELNFP NSAASLPVPA STSPRDIQAA AASAAAALGA  120
AKDALSGETI AESGDHHQAP RNDSVMIEPA ERPMVLQEFM DEELIFDMPN LLVNMAEGML  180
LSPPRLDIAG DAADDDDHGV GDEHNLWKFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161891473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430287.11e-152ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-56ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLV4SS241e-151V4SS24_9ROSI; Uncharacterized protein
STRINGXP_006430287.11e-152(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.18e-43ERF family protein