PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012681m | ||||||||
Common Name | CICLE_v10012453mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25423.6 Da PI: 8.9037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.1e-09 | 165 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq Ciclev10012681m 165 SHSIAERVRREKINKKMRCLQDLVPGC----HKDMGMAGMLEEIINYVHSLQ 212 8*************************9....777****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.94E-9 | 159 | 216 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-15 | 159 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 161 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.932 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 165 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-8 | 167 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MADFRENTQS LRASQAFTEL GVNMEMVKHF AELKPSMLEY FNTPNFSLAT PLAHQQPEFL 60 AGCSYNNSFS NFQTDSRIVV PRVHTVRGNE DVLYESSRRE VTEQSTSISK TMCSSASTSE 120 TQGDTYKNKK IRSRRGKKVS SNEKEEGNPE RIIHVRAKRG QATDSHSIAE RVRREKINKK 180 MRCLQDLVPG CHKDMGMAGM LEEIINYVHS LQNQVEVSTD ISKV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430772.1 | 1e-163 | transcription factor bHLH75 | ||||
TrEMBL | V4T396 | 1e-167 | V4T396_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430772.1 | 1e-162 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 2e-37 | BR enhanced expression 3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012681m |
Entrez Gene | 18039681 |