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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012556m | ||||||||
Common Name | CICLE_v10012556mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 251aa MW: 28602.5 Da PI: 7.0552 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.3 | 4.1e-29 | 137 | 191 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ Wt++LHe+Fve+v++LGGsekAtPk+il+lmk k L++ +vkSHLQkYR+ Ciclev10012556m 137 KKRITWTKDLHEHFVECVNRLGGSEKATPKAILKLMKSKELSILQVKSHLQKYRS 191 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.714 | 134 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.85E-16 | 135 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 135 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-23 | 137 | 192 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-8 | 141 | 190 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEAQSQEKQN LEPGKMPSSI ISSYHLQELA SAFYLTDQCF FGFHQNQHKN NEVIEASLPP 60 SNQFSGDNFS EKLSELDTLE SLVLSSNHNR KFPRKISSIP TPSESSQNTK NMSIFSSEEK 120 QSCGLISDSY RHILSNKKRI TWTKDLHEHF VECVNRLGGS EKATPKAILK LMKSKELSIL 180 QVKSHLQKYR SEKLISDQSL QGFPEKTVCI NDIPQLYMKM SMQIREALQL QLELEKHLHD 240 QLEACTSIEL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 137 | 193 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024949055.1 | 1e-172 | protein PHR1-LIKE 1-like isoform X1 | ||||
TrEMBL | V4S6I6 | 0.0 | V4S6I6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006429843.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27531 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012556m |
Entrez Gene | 18038637 |