PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012525m

Common Name

CICLE_v10012525mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 258aa MW: 29334.1 Da PI: 7.1652

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012525m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	89	141	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k Ciclev10012525m 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 4569************************************************9 PP
2	HD-ZIP_I/II	117.7	6.6e-38	87	179	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+k+rl+++q+++LE+sF+ee kL+p+rK++lareLglqprq+avWFqnrRAR+k+kqlE y++Lk++yda+++e+ +L++ev +L++ lke Ciclev10012525m 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLKE 179 69**************************************************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-20	75	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	83	143	IPR001356	Homeobox domain
SMART	SM00389	3.8E-18	86	147	IPR001356	Homeobox domain
CDD	cd00086	3.39E-16	88	144	No hit	No description
Pfam	PF00046	6.4E-17	88	141	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-21	93	142	IPR009057	Homeodomain-like
PRINTS	PR00031	9.0E-6	114	123	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	118	141	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.0E-6	123	139	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDWSSTTGNL RTFVPVIPRP ETSFDLLYNY NYDQFPGMDQ MNKHMHAAAA AAAMAEKSSS 60 SIGLIPAAEL MEKNIHHYGS SSTSSQERKK RLTSDQLESL ERSFQEEIKL DPDRKMKLAR 120 ELGLQPRQIA VWFQNRRARW KSKQLELLYD SLKQEYDAVS REKLKLQEEV MKLKRMLKEQ 180 GTSTRNMMNK QVSTGITEVS GEETVESTSV ATINGSFSNK HHQISECNYL FNVDEEFNAA 240 AAPLPSPFWG LLPTSFQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARWKSKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430338.1	0.0	putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_006482366.1	0.0	putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2H5MZB1	0.0	A0A2H5MZB1_CITUN; Uncharacterized protein
TrEMBL	V4S7W9	0.0	V4S7W9_9ROSI; Uncharacterized protein
STRING	XP_006482366.1	0.0	(Citrus sinensis)
STRING	XP_006430338.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-50	homeobox 51

Link Out ? help Back to Top
Phytozome	Ciclev10012525m
Entrez Gene	18039319

Publications ? help Back to Top
Zhao JL, et al. Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus. J Integr Plant Biol, 2015. 57(11): p. 925-35 [PMID:25735194]