PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 269aa MW: 30470.6 Da PI: 6.7994

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012468m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.7	4.3e-44	6	139	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ppGfrF Pt+eelv++yL++k++g++ l+++++i+ ++iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWkatg Ciclev10012468m 6 PPGFRFYPTEEELVSFYLHNKLAGHRqdlnLQMDRIIPVINIYDYNPWDLPQfsqlLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKATG 99 9*********************998887788789**********9646553344677*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + v+s++++ vg k+t+vfy+grap+g+kt+W m+ey+ Ciclev10012468m 100 SPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYK 139 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-48	4	169	IPR003441	NAC domain
PROSITE profile	PS51005	48.53	5	169	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	6	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVDDYPPGFR FYPTEEELVS FYLHNKLAGH RQDLNLQMDR IIPVINIYDY NPWDLPQFSQ 60 LLCHRDPEQW FFFIPRQESE ARGGRPNRLT SAGYWKATGS PGLVYSSNNR PVGEKRTMVF 120 YRGRAPNGRK TEWKMNEYKA IDAEASTSSS SATPPPVRHE FSLCRVYKKS KSLRAFDRRP 180 PPGPGATSIG EPREVPQRAD DHRGENIHNI QMAAPERTSS PDSSSSGDDG SQPPQVGGSS 240 NSAATTATAS NNEAWWDWEW DQLDNWKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-36	6	172	18	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-36	6	172	18	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-36	6	172	18	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-36	6	172	18	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-36	6	172	21	171	NAC domain-containing protein 19
3swm_B	1e-36	6	172	21	171	NAC domain-containing protein 19
3swm_C	1e-36	6	172	21	171	NAC domain-containing protein 19
3swm_D	1e-36	6	172	21	171	NAC domain-containing protein 19
3swp_A	1e-36	6	172	21	171	NAC domain-containing protein 19
3swp_B	1e-36	6	172	21	171	NAC domain-containing protein 19
3swp_C	1e-36	6	172	21	171	NAC domain-containing protein 19
3swp_D	1e-36	6	172	21	171	NAC domain-containing protein 19
4dul_A	1e-36	6	172	18	168	NAC domain-containing protein 19
4dul_B	1e-36	6	172	18	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430144.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-72	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A067FWE8	0.0	A0A067FWE8_CITSI; Uncharacterized protein
TrEMBL	V4UUN7	0.0	V4UUN7_9ROSI; Uncharacterized protein
STRING	XP_006430144.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-71	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Ciclev10012468m
Entrez Gene	18040047

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]