PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10012453m

Common Name

CICLE_v10012453mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 273aa MW: 30879.5 Da PI: 7.0042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10012453m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.3e-09	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++iN+++ L++l+P + +k + a +Le+ ++Y++sLq Ciclev10012453m 165 SHSIAERVRREKINKKMRCLQDLVPGC----HKDMGMAGMLEEIINYVHSLQ 212 8***********************9....777**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-16	159	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-9	159	216	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.6E-17	161	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.932	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-8	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MADFRENTQS LRASQAFTEL GVNMEMVKHF AELKPSMLEY FNTPNFSLAT PLAHQQPEFL 60 AGCSYNNSFS NFQTDSRIVV PRVHTVRGNE DVLYESSRRE VTEQSTSISK TMCSSASTSE 120 TQGDTYKNKK IRSRRGKKVS SNEKEEGNPE RIIHVRAKRG QATDSHSIAE RVRREKINKK 180 MRCLQDLVPG CHKDMGMAGM LEEIINYVHS LQNQVEFLSM ELAAACSSND LNIETESSRK 240 TQGTNSHEAL EMEIWAKEAY GEYTSFHSTW SL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430772.1	0.0	transcription factor bHLH75
TrEMBL	V4STF1	0.0	V4STF1_9ROSI; Uncharacterized protein
STRING	XP_006430772.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17213	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-48	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Ciclev10012453m
Entrez Gene	18039681