PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012428m
Common NameCICLE_v10012428mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 278aa    MW: 30785.4 Da    PI: 8.8909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012428mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-0584104323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+k Fs++  L  H++ H
  Ciclev10012428m  84 CKYCSKKFSNSQALGGHQNAH 104
                      ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-679109No hitNo description
Gene3DG3DSA:3.30.160.602.1E-480108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92682109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSARVSCKDF DDKKMKGKME EELLDHSLDL RLNSSDNLEV DHESNLELNL LDRLDINSPK  60
GSSEKSHNAA AKHQVAAAKR LFLCKYCSKK FSNSQALGGH QNAHKRERAT FKKDKEIDNV  120
ITLDQVPNPF IYPYSAMAAA AGLSNHHCYN GSFDRSPLGV NMHSMIHKPH QYHTHHPPLA  180
HRVINGPQFP MHHRSNDYWV PNSGLHQAPL EHVGINLSRA PFGRFESSLS ANSDATTAKN  240
NVAFAGQANF WGAAGPSRNR DQQRDPAATG PNLSLNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4T2K60.0V4T2K6_9ROSI; Uncharacterized protein
STRINGXP_006430491.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2130055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-16zinc-finger protein 1