PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012352m
Common NameCICLE_v10012352mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33257.1 Da    PI: 7.0001
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012352mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1777129456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ciclev10012352m  77 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 129
                      4568889*********************************************9 PP
2HD-ZIP_I/II128.52.7e-4175166192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+rl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el 
  Ciclev10012352m  75 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKDDNDSLQAQNKKLHAELV 166
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1965133IPR009057Homeodomain-like
PROSITE profilePS5007116.97371131IPR001356Homeobox domain
SMARTSM003893.0E-1774135IPR001356Homeobox domain
CDDcd000865.60E-1676132No hitNo description
PfamPF000467.6E-1577129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1879138IPR009057Homeodomain-like
PRINTSPR000311.6E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5111127IPR000047Helix-turn-helix motif
PfamPF021835.1E-15131171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAFPPHSFMF QSHEDNDHLP SPTSLNSLPA PHFFHGAPFM MKRSMSFSGV NDKCHEDHHV  60
HGDEDLSDDG SQVGEKKKRL NLEQVKALEK SFELGNKLEP ERKLQLARAL GLQPRQIAIW  120
FQNRRARWKT KQLEKDYEVL KKQFEALKDD NDSLQAQNKK LHAELVSLKN KDSNNGQVIH  180
LKKENEGSAS NGSDNSSDIN LDISRTQVIT SPVSSSHLTS KQLFPTSTRP AAGSMTQLLQ  240
GSSIPDHLQC LKIDHHQMVQ VQDESFCHMF NGIEEQQATA SSFWQWPGQQ NFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431136.10.0homeobox-leucine zipper protein HAT7
SwissprotQ004661e-90HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLV4T4B30.0V4T4B3_9ROSI; Uncharacterized protein
STRINGXP_006431136.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-89homeobox 3