PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012203m
Common NameCICLE_v10012203mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 323aa    MW: 34507.1 Da    PI: 6.8817
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012203mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.9e-30113166155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Ciclev10012203m 113 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 166
                      59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059110169IPR017930Myb domain
SuperFamilySSF466893.23E-20110170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30112171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24114166IPR006447Myb domain, plants
PfamPF002491.3E-7116165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MREDDSNWFA RWEEDLPSYE ELIPLSQTLI SPDLAVAFDI RNPVNGNGNG NGNALSQHQQ  60
LQQQQPLTPT NNNNNSNSNN NNPLGQSDFA AENSAEMGSG GAGGDEPART LKRPRLVWTP  120
QLHKRFVDAV AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGLSGGGGG  180
GAGGVNGGGS GAAGVNADPA TDHLFASSPV PAHFLHPGAR GNSDHFLPYV PVAALHQQQM  240
AVAAAVGNPH LQGHQYHRQM SHFGSPANGQ FEHHLFARQA QPQQVHRMGA PVHSTVPSSY  300
VEDLESANGG RKVLTLFPTG DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-33113169157Transcription factor LUX
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430511.10.0transcription factor MYBC1
SwissprotO222107e-68MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A067ER430.0A0A067ER43_CITSI; Uncharacterized protein
TrEMBLV4T2L90.0V4T2L9_9ROSI; Uncharacterized protein
STRINGXP_006430511.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-102G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]