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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10012093m |
| Common Name | CICLE_v10012093mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
NAC |
| Protein Properties |
Length: 349aa MW: 39441.3 Da PI: 6.6022 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10012093m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.9 | 8e-57 | 12 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++
Ciclev10012093m 12 LPPGFRFHPTDEELITHYLTPKVFDGCFSA-RAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK 104
79*************************999.89***************99999***************************************** PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
++lvg+kktLvfykgrapkg+kt+Wvmheyrle
Ciclev10012093m 105 -AKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLE 138
.999*****************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEKYDDQEQI ELPPGFRFHP TDEELITHYL TPKVFDGCFS ARAIGEVDLN KCEPWDLPRR 60
AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKAKALVG MKKTLVFYKG 120
RAPKGQKTNW VMHEYRLEGK YSAYDHPKTA KNEWVICRVF QKSGGGKKTH IQGMVKLGSF 180
GNGMGSSALP PLMDSSPYNS ETRTTINETF HVTCFSDALE DQKAQEDMID SFNNSLLASS 240
SSSNPHSEIS PASIFLSKSS FSNSLYADQI LPRIANMQYP DSFLMQDQSI LKMLLENHGP 300
NMKKNSKAEF SQDDSVVSNH EFIQGSFDDQ EDPSSSAGPV ALDCLWNY*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ619349 | 0.0 | FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds. |
