PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012055m
Common NameCICLE_v10012055mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 357aa    MW: 40034.7 Da    PI: 7.1456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012055mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.1e-24169229259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ +++fpr+Y+rCt++   gC++ k+v+r +e+p +  +tY g+H+++
  Ciclev10012055m 169 DDGHAWRKYGQKVILNARFPRNYFRCTHKfdqGCQASKQVQRIQEEPPLHRTTYYGRHTCK 229
                      8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-25158229IPR003657WRKY domain
SuperFamilySSF1182903.27E-24162229IPR003657WRKY domain
PROSITE profilePS5081120.254163226IPR003657WRKY domain
SMARTSM007747.9E-36168230IPR003657WRKY domain
PfamPF031063.7E-23169229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLLTYLKASI CLFSFATPTW KKRGKKIIMK MEAGQATSSS SWLENSSDRR RAIEELIKGQ  60
EMALQLRNLI HKSTKSGEGS KAMIINQDLV ANILSSFTNS LSILKNGDSD EASQVQEHTQ  120
LSSPCWEAYL KTEDSGESSK SSTVKDRRGC YKRRKCAESW TEHSSTLTDD GHAWRKYGQK  180
VILNARFPRN YFRCTHKFDQ GCQASKQVQR IQEEPPLHRT TYYGRHTCKS LIKSSQLMLD  240
STTSDQCPMI SFGSAHITEK DFNPFLSSFP SIKQESNKDD QGPLSDMTHN QSSSSDEYLV  300
SHDFPAFESN EHMKVLSSDH GDVISGVNSS CTASAHSLDL AVDMSVNFDD VLEFNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21169229969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6101710.0KM610171.1 Citrus japonica WRKY70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429596.20.0probable WRKY transcription factor 70
RefseqXP_006481203.10.0probable WRKY transcription factor 70
TrEMBLV4T0120.0V4T012_9ROSI; Uncharacterized protein
STRINGXP_006429596.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-41WRKY DNA-binding protein 70