PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012008m
Common NameCICLE_v10012008mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 369aa    MW: 41603.3 Da    PI: 7.0285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012008mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.1e-32124233199
                      EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k ltpsdv+k++rlv+pk++ae++           ++++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+
  Ciclev10012008m 124 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggggadlgSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVILFE 217
                      99*****************************999998555558889************************************************ PP

                      E-SSSEE..EEEEE-S CS
               B3  84 ldgrsefelvvkvfrk 99 
                      ++++++++l+++++r+
  Ciclev10012008m 218 RHRTDSERLFIGWRRR 233
                      98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-40119238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-31120232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-29122224No hitNo description
SMARTSM010191.6E-26124234IPR003340B3 DNA binding domain
PfamPF023623.5E-29124233IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846124234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSINHFSTDL QETPWWQQHP QQLQQSMMET TQNSSNNSSS SATDPQQQQF SSWSSPHHHH  60
QFYHHHQQHQ HHLWLDSYNN NNNNSHHNPT LSFNLNSQHD ATEAHPMTNL NSNQEQELEK  120
EPMFEKPLTP SDVGKLNRLV IPKQHAEKYF PLGGGGADLG SSSSDKGLLL SFEDESGKCW  180
RFRYSYWNSS QSYVLTKGWS RYVKEKRLDA GDVILFERHR TDSERLFIGW RRRGATAVAQ  240
VAQAGGAAAG GCGWPRGLYP NHPYPVDVAH GHGVSAPLYQ HAGSGVQSQT TSVGNSRTLR  300
LFGVNFECQV DDKSEGSESQ AEAHGHQQFN YPVEAYDSNS TNRHNHVVGQ FNCLCYRHSV  360
IANKIMSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-491192333113B3 domain-containing transcription factor NGA1
5os9_B3e-491192333113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430125.10.0B3 domain-containing protein At5g06250 isoform X1
SwissprotQ9FNI35e-69Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLV4SWF20.0V4SWF2_9ROSI; Uncharacterized protein
STRINGXP_006430125.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-61B3 family protein