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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10011938m |
Common Name | CICLE_v10011938mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
SBP |
Protein Properties |
Length: 389aa MW: 40876.2 Da PI: 9.1103 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10011938m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 137.2 | 5e-43 | 88 | 164 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+CqvegC++dls+ak y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++
Ciclev10011938m 88 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPT 164
6**************************************************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MELGSDYLAE SGGGSGSGSG SGLSSAEPSL NGLKFGKKIY FEDVGTAGAP FPGSGSSSGS 60 GSGSGSGSGR KVRGVGGGMV TSGQQPPRCQ VEGCKVDLSD AKAYYSRHKV CGMHSKSPVV 120 TVAGLEQRFC QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPTSGPFLG TRYGRLSSSV 180 IENSSQGGGF LIDFSAYQMV GGRDGWPVTS VSKQVSGNQT TVTARHLPQP LWQNHSQDPP 240 PDRYLQCSTA GTGFSGPGIP CGGCFTGVAD SNCALSLLSN QPWGSKNPTP GHGVGDLMHA 300 HTKSVTQPVS PHGAAINQYP NMSWGFKGNA AGSSSHQMAP QLGLAPTSVP INSQFSGELE 360 SSQQSRQYMK LQHSRDYDDS NQQIHWSL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ502237 | 0.0 | FJ502237.1 Poncirus trifoliata squamosa promoter-binding protein (SPL9) mRNA, complete cds. |