PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011591m | ||||||||
Common Name | CICLE_v10011588mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | AP2 | ||||||||
Protein Properties | Length: 489aa MW: 54254.6 Da PI: 6.9812 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ciclev10011591m 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 202 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.3 | 3.8e-13 | 246 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+++lg + ++eeAa+a+++a +k g Ciclev10011591m 246 SKYRGVTLHK-CGRWEARMGQY--L-GRKYVYLGLYNSEEEAARAYDRAVLKCIG 296 89********.7******5552..2.26*********************998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-9 | 153 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-15 | 153 | 211 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.06E-11 | 153 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 154 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-30 | 154 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.411 | 154 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-17 | 246 | 305 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 246 | 295 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-23 | 246 | 304 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 247 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 247 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.554 | 247 | 304 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MLDLNLSVYS GEYSNSMNRE SSGSFHSSVV TSVGDCCSPA SSSGGYIFSI LKDSNNNSGS 60 NQNDHHHHQH HYQNDNVLTQ GGGGGGGGGS SGIPFIPLII NTEVEEEEEG NNNNDDERDR 120 VASLSQQRDV QIQQHSHSRQ MKKTRRGPRS KSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTALAAA RAYDRAAIKF RGVDADINFH VDDYQDDIRI MSNFTKDEFV YSLRRQNTAA 240 ASRGTSKYRG VTLHKCGRWE ARMGQYLGRK YVYLGLYNSE EEAARAYDRA VLKCIGREAV 300 TNFDPNSYDE NSIYGTNPAE GDNEVDLNLG IAPPKSNDGR KDENNWSKFL FQNGWNNMPN 360 DFGARKTQLE NSVAATARVQ PAPCNPAMPI EPSPPGWSGG FSNHLLNERA LEKGNINSFP 420 SWTWQFEAPL VGSAAVPRFS TAASSGFPSM ITAPSVVSNH LHYPNTMVHD RYTQSIINPN 480 MPHFCCRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5635 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428895.1 | 0.0 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | B8AMA9 | 2e-87 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | V4ST53 | 0.0 | V4ST53_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428894.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-81 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011591m |
Entrez Gene | 18039165 |