PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011588m
Common NameCICLE_v10011588mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 490aa    MW: 54382.7 Da    PI: 6.9812
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011588mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-17153202155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ciclev10011588m 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 202
                      78*******************......55************************997 PP
2AP241.33.8e-13246296155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     rk+++lg + ++eeAa+a+++a +k  g
  Ciclev10011588m 246 SKYRGVTLHK-CGRWEARMGQY--L-GRKYVYLGLYNSEEEAARAYDRAVLKCIG 296
                      89********.7******5552..2.26*********************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-15153211IPR016177DNA-binding domain
CDDcd000181.97E-11153209No hitNo description
PfamPF008475.9E-9153202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16154210IPR001471AP2/ERF domain
SMARTSM003801.0E-30154216IPR001471AP2/ERF domain
PROSITE profilePS5103217.411154210IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17246305IPR016177DNA-binding domain
CDDcd000181.36E-23246304No hitNo description
PfamPF008471.8E-9246295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-15247304IPR001471AP2/ERF domain
SMARTSM003802.1E-31247310IPR001471AP2/ERF domain
PROSITE profilePS5103215.554247304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MLDLNLSVYS GEYSNSMNRE SSGSFHSSVV TSVGDCCSPA SSSGGYIFSI LKDSNNNSGS  60
NQNDHHHHQH HYQNDNVLTQ GGGGGGGGGS SGIPFIPLII NTEVEEEEEG NNNNDDERDR  120
VASLSQQRDV QIQQHSHSRQ MKKTRRGPRS KSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTALAAA RAYDRAAIKF RGVDADINFH VDDYQDDIRI MSNFTKDEFV YSLRRQNTAA  240
ASRGTSKYRG VTLHKCGRWE ARMGQYLGRK YVYLGLYNSE EEAARAYDRA VLKCIGREAV  300
TNFDPNSYDE NSIYGTNPAE GDNEVDLNLG IAPPKSNDGR KDENNWSKFL FQNGWNNMPN  360
DFGARKTQLE NSVAATARVQ PAPCNPAMPI EPSPPGWSGG FSNHLLNQER ALEKGNINSF  420
PSWTWQFEAP LVGSAAVPRF STAASSGFPS MITAPSVVSN HLHYPNTMVH DRYTQSIINP  480
NMPHFCCRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.56350.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480582.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AMA92e-87AP22_ORYSI; APETALA2-like protein 2
TrEMBLV4URJ50.0V4URJ5_9ROSI; Uncharacterized protein
STRINGXP_006428894.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2288634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-81AP2 family protein