PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011432m
Common NameCICLE_v10011433mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 543aa    MW: 60018.4 Da    PI: 7.1842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011432mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix612.8e-19137223186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +L++a+ ++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k +nl+kryk +++++ ++   + s++p+f+++e
  Ciclev10011432m 137 EWSDAAIACLLDAYLDKFTQLNRGNLRGRDWEEVAATVseRCEKLNKSVEQCKNKVDNLKKRYKLERHRMTNG-GMAASHWPWFKKME 223
                      5*************************************888899****************************9.555669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-21135225No hitNo description
Gene3DG3DSA:3.40.1160.102.3E-65267535IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.4E-48276319IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.23E-108278536No hitNo description
PfamPF006961.6E-22279515IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.4E-48363535IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MASCDDDFPL LGDDHHHHQA NPNHPHHIFQ QQSPYAPHRF APRHAQQPQS QQIPDTIGVQ  60
CGDEVEGEND ADSAFTYDNN SNNQAILDVR TEKRKDREDV NNGDVTNTGS SPSPSPSPYT  120
CKKAKSYSNE YRKDREEWSD AAIACLLDAY LDKFTQLNRG NLRGRDWEEV AATVSERCEK  180
LNKSVEQCKN KVDNLKKRYK LERHRMTNGG MAASHWPWFK KMEEIVGNSL PIKTVTDDDK  240
ASGSSTNSIR QTKRYVAATP IPTGQINNVK AKPNPRWRRV VFKISGVALA GTGQNNIDSK  300
VAMLISREVA TACRLGVEVL TPFVIVVCKT GNLIATYFFL VVFQVAIVVG GSNFFCGDTW  360
VTETGYDRST AYQIGMMASV MNSVLLQSAF EKMSVQARVQ TAFTLPEVTE PYNRQRAIRH  420
LEKGRVVIFG GIGSGVANPL FSTDMAAALR ASEIHAEVVL KGTNVDGVYD CHSRDNNATF  480
EHISFRELGS RGAIPMDSTA LSFCDENSIP VVVFNLLEPG NISKAICGDQ VGTFIDRTGR  540
MS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5127753550279Uridylate kinase
3nwy_B2e-5127753550279Uridylate kinase
3nwy_C2e-5127753550279Uridylate kinase
3nwy_D2e-5127753550279Uridylate kinase
3nwy_E2e-5127753550279Uridylate kinase
3nwy_F2e-5127753550279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430330.10.0uncharacterized protein LOC18037939 isoform X1
TrEMBLV4SWZ20.0V4SWZ2_9ROSI; Uncharacterized protein
STRINGXP_006430330.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein