PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011367m
Common NameCICLE_v10011367mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 577aa    MW: 63535.3 Da    PI: 4.7998
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011367mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.29.8e-1402065681374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAea+++++l+ a+al++++  la+ ++ +m+++a+yf+eALa+r++r    +y    p++  +++  + l+    f+e++P+lkf+
  Ciclev10011367m 206 LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYR----IY----PQDCLDSSYNDILQ--MHFYETCPYLKFA 289
                      689****************************************************....44....34433223444433..36*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea+++++rvH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+d
  Ciclev10011367m 290 HFTANQAILEAFNNANRVHVVDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLAD 383
                      ********************************************************************************************** PP

             GRAS 189 leleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      le+++L+++p   E++aVn+v++lhrll++++ +e+    v++ +k ++Pk++++veqea+hns+ Fl+rf+eal+yys+lfdsle +  +  +
  Ciclev10011367m 384 LEPDMLDIRPpeVETVAVNSVFELHRLLARPGGIEK----VVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPS 473
                      **********9999*********************9....*********************************************777556668 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++++++++lgr+i+n+vaceg++r+erhetl +Wr rl++aGF pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW
  Ciclev10011367m 474 QDQVMSEVYLGRQICNIVACEGTDRNERHETLTQWRTRLGSAGFDPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAW 567
                      889999999************************************************************************************* PP

             GRAS 374 r 374
                      +
  Ciclev10011367m 568 Q 568
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.9E-3543109IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.6E-3943116No hitNo description
PROSITE profilePS5098568.593180547IPR005202Transcription factor GRAS
PfamPF035143.4E-137206568IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MKRDHQHSYG GGSGSGKGDY SSSTGNANKA KMWEEEQDTE GMDELLEVLG YKVRSSEMAD  60
VAQKLEQLEM VMGTAQEDGI SHLATDTVHY NPSDVSGWVQ SMLEGLNNTG FDSQARPIQD  120
PAESSTVNSI LGQQTSNQSR IFNDDSEYDL RAIPGSAAYP QPDSETENNR NKRMRVEINT  180
ANTNTIIPTE LARPVVVDSQ ETGVQLVHTL MACAEAIQQE NLKVADALVK HIGLLAAAQA  240
GAMRKVATYF AEALARRIYR IYPQDCLDSS YNDILQMHFY ETCPYLKFAH FTANQAILEA  300
FNNANRVHVV DFSLKQGMQW PALMQALALR PGGPPAFRLT GIGPPQPDNT DALQQVGWKL  360
AQLADTIGVE FEFRGFVCNS LADLEPDMLD IRPPEVETVA VNSVFELHRL LARPGGIEKV  420
VSSIKAMRPK IITIVEQEAN HNSPVFLDRF TEALHYYSSL FDSLEGSGLT PPSQDQVMSE  480
VYLGRQICNI VACEGTDRNE RHETLTQWRT RLGSAGFDPV HLGSNAYKQA SMLLALFAGG  540
DGYRVEENNG CLMLGWHTRP LIATSAWQLA KSTLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6820156713377Protein SCARECROW
5b3h_D6e-6820156713377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430617.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLV4ST100.0V4ST10_9ROSI; Uncharacterized protein
STRINGXP_006430617.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein