PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011293m
Common NameCICLE_v10011293mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 625aa    MW: 71002.7 Da    PI: 5.9233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011293mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.3e-5661331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePw+Lp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
  Ciclev10011293m   6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99***************6434555777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  Ciclev10011293m  99 NS-QTRSVGMKKTLVYYRGRAPHGIRTHWVMHEYRL 133
                      **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-644156IPR003441NAC domain
PROSITE profilePS5100561.3676156IPR003441NAC domain
PfamPF023656.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWE LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GIRTHWVMHE YRLDERECET DSGLQDAYAL CRVFKKSAIG PKIVEHYAPT PMTTANQMTH  180
HANSPSIEYY SESSDYPMPY DRCLPSNIGT ESSNQAHDGK WTQFLSEDSF GLNNTTPFSN  240
YATTPYHPCK IDVALECAKL QHRLSLPPLE VEDFSHQIGV TDFKMQHHSH ALTQQELMIN  300
QSSGVQDPWG GNYSNAAADD FSFMMTGDDN HYYDPSNNNN NNGMTSVRYN DKLWEGFNSR  360
SIEIGYLDED VKSERMVENL RWVGMSNKDL DKSFVEEHKI VPIENISSFQ RMESHEVEGE  420
TSHNNCLGFN DSELNDFSLG FIDDEPNKNH LEEEIGDGTL ASSPSFEVVE EIKVNHGMFV  480
STRQAADTFF HQIVPSQIVQ VQLNRAEVAN NLSINAKAEK FTGTFMKPWK EIASAVVCML  540
VLVIMHGFYY LGENLDNGKL NIDDRFNVKE KGCSSKKIKE GDLLVNIRGG RGDNFIVCLK  600
KIGLFLTISL ALCTMWANHV VVSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56115812167NO APICAL MERISTEM PROTEIN
1ut4_B2e-56115812167NO APICAL MERISTEM PROTEIN
1ut7_A2e-56115812167NO APICAL MERISTEM PROTEIN
1ut7_B2e-56115812167NO APICAL MERISTEM PROTEIN
3swm_A2e-56115815170NAC domain-containing protein 19
3swm_B2e-56115815170NAC domain-containing protein 19
3swm_C2e-56115815170NAC domain-containing protein 19
3swm_D2e-56115815170NAC domain-containing protein 19
3swp_A2e-56115815170NAC domain-containing protein 19
3swp_B2e-56115815170NAC domain-containing protein 19
3swp_C2e-56115815170NAC domain-containing protein 19
3swp_D2e-56115815170NAC domain-containing protein 19
4dul_A2e-56115812167NAC domain-containing protein 19
4dul_B2e-56115812167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430405.10.0NAC domain-containing protein 86
TrEMBLV4SX980.0V4SX98_9ROSI; Uncharacterized protein
STRINGXP_006430405.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-162NAC domain containing protein 28