PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011261m
Common NameCICLE_v10011261mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 647aa    MW: 73624.7 Da    PI: 8.6871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011261mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08460501240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Ciclev10011261m 460 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 501
                      69***********************************99876 PP
2Myb_DNA-binding25.62.8e-08588635247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      ++W++  +  lv+a k ++++   +W+++a  ++ g+t  qck ++ ++
  Ciclev10011261m 588 DAWSAVQERALVQALKTFPKEtsqRWERVATAVP-GKTVIQCKKKFASL 635
                      58********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1104.7E-2191185IPR001623DnaJ domain
SuperFamilySSF465654.97E-2092198IPR001623DnaJ domain
SMARTSM002716.5E-1494169IPR001623DnaJ domain
CDDcd062577.10E-1395166IPR001623DnaJ domain
PfamPF002262.5E-1895174IPR001623DnaJ domain
PROSITE profilePS5007618.50195177IPR001623DnaJ domain
PRINTSPR006259.2E-9100118IPR001623DnaJ domain
PRINTSPR006259.2E-9118133IPR001623DnaJ domain
PRINTSPR006259.2E-9149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
SuperFamilySSF466896.73E-8456502IPR009057Homeodomain-like
PROSITE profilePS512936.985457512IPR017884SANT domain
SMARTSM007172.2E-7458511IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5460501IPR009057Homeodomain-like
PfamPF002492.5E-7460501IPR001005SANT/Myb domain
CDDcd001671.17E-5461501No hitNo description
PROSITE profilePS512938.909585640IPR017884SANT domain
SuperFamilySSF466894.71E-9585635IPR009057Homeodomain-like
SMARTSM007178.8E-9586638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-5586635IPR009057Homeodomain-like
CDDcd001678.50E-6589636No hitNo description
PfamPF002492.2E-6589635IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLVHASFRLI SYSDELVDGQ PIYVSSNCLP LKASKYEPAG HSFHAAALKL LGCEEDAEVD  60
DQKVSNDKEQ TCFPSYESYS SKGKKKSGEG SNQQDHYALL GLSHLRYLAT EDQIRKSYRE  120
TALKYHPDKQ AALLFAEETE AAKQAKKDEI ETHFKAVQEA YEVLIDPVKR RIYDSTDEFD  180
DAIPADCAPQ DFYKVFGPAF TRNGRWSANQ LVPSLGDENT PLKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEEYARI RTLVDNAYKR DPRILKRKEA  300
EKAEKQKKKE AKYLAKKLQE EEAARAAEEE RRRKVEEEKR VAEVALQQKK VKEKEKKLLR  360
KERTRLRTLS ASVTSQHLLD VSTEDVESLC MSFDMEQLRN LCDKMEKSEG LEQAKLIRNA  420
VGHADESEAK KQDEKKNVQQ NGSVETNGST LLKSFEKKEK PWSKEEIELL RKGMQKYPKG  480
TSRRWEVISE YIGTGRSVEE ILKATKTVLL QKPDGAKAFD SFLEKRKPAQ SIASPLTTRE  540
EVVGASTPPV VQNSGARTDS SEESSSSTSQ KPADVTAANG VSSSSDHDAW SAVQERALVQ  600
ALKTFPKETS QRWERVATAV PGKTVIQCKK KFASLKENFR SKKSAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-2019129420123Zuotin
5dje_B8e-2019129420123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429433.10.0dnaJ homolog subfamily C member 2
TrEMBLV4S5H70.0V4S5H7_9ROSI; Uncharacterized protein
STRINGXP_006429433.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain